🧬

CASSIA Pipeline

Complete end-to-end analysis

API Configuration

💡 Configure individual models for each pipeline step in the Model Configuration section below.

⚙️ Model Configuration
🔍

Initial Annotation

Identify cell types from marker genes

Selected: Google Gemini 2.5 Flash
medium quality
fast
$low cost
📊

Quality Scoring

Evaluate annotation quality and confidence

Selected: High-performance open-source model
medium quality
fast
$low cost
🚀

Annotation Boost

Improve low-scoring annotations with advanced analysis

Selected: Claude Sonnet 4 via OpenRouter
high quality
medium
$high cost
📁 Data Upload
⚙️ Analysis Configuration
🚀 Analysis Control

Please complete the following to start analysis:

  • Set API key
  • Upload marker data file
📊 Analysis Info
Provider:openrouter
Model:google/gemini-2.5-flash
Agent Models:
🔍 Annotation:google/gemini-2.5-flash
📊 Scoring:deepseek/deepseek-chat-v3-0324
🚀 Boost:anthropic/claude-sonnet-4